| Revision as of 00:41, 3 March 2017 edit68.37.204.249 (talk)No edit summary← Previous edit |
Latest revision as of 02:34, 3 November 2024 edit undoCitation bot (talk | contribs)Bots5,436,613 edits Add: bibcode, arxiv, page, issue. | Use this bot. Report bugs. | Suggested by Whoop whoop pull up | Category:Graphics software | #UCB_Category 114/127 |
| (28 intermediate revisions by 16 users not shown) |
| Line 1: |
Line 1: |
|
{{Infobox software |
|
{{Infobox software |
|
| name = tomviz.com |
|
| name = tomviz.com |
|
| website = {{url|http://www.tomviz.com/}} |
|
| website = {{url|www.tomviz.org}} |
|
⚫ |
| caption = volumetric visualization of scientific data |
|
| status = Active |
|
|
⚫ |
| released = {{Start date and age|2014}} |
| ⚫ |
| caption = volumetric visualization of scientific data |
|
|
⚫ |
| latest_release_version = 1.10.0 |
| ⚫ |
| released = {{Start date and age|2014}} |
|
|
⚫ |
| operating_system = {{unbulleted list|]|]|]}} |
| ⚫ |
| latest_release_version = 0.9.5 <ref name="tomviz0.9.3"/> |
|
|
⚫ |
| language = English |
| ⚫ |
| operating_system = ], ], ] |
|
|
|
| license = ] |
| ⚫ |
| language = English |
|
|
| license = ] |
|
|
}} |
|
}} |
|
'''tomviz''' is an ] software platform for reproducible volumetric visualization and data processing.<ref name="opensource.com"/> The platform is tailored to high-resolution ], with features that allow alignment and reconstruction of ]. Current version is 0.9.5.<ref name="tomviz0.9.0"/><ref name="tomviz0.9.1"/> |
|
'''tomviz''' is an ] software platform for reproducible volumetric visualization and data processing.<ref name="opensource.com"/> The platform is designed for a wide range scientific applications but is especially tailored to high-resolution ], with features that allow alignment and reconstruction of ]. The tomviz platform allows graphical analysis of 3D datasets, but also comes packaged with ], ], and ] tools to allow advanced data processing and analysis. Current version is 1.10.0.<ref name="tomvizDownload" /> |
|
|
|
|
|
|
In 2022 the tomviz platform was used to enable 3D visualization of specimens during an electron or cryo-electron tomography experiment.<ref name="natcom" /> Tomviz is built with multi-threaded data analysis pipeline runs dynamic visualizations that update as new data is collected or reconstruction algorithms proceed. Scientists can interactively analyse 3D specimen structure concurrent with a tomographic reconstruction after or during an experiment. |
| ⚫ |
] |
|
|
|
|
|
⚫ |
] |
|
|
|
|
|
==References== |
|
==References== |
|
<references> |
|
<references> |
|
<ref name="opensource.com">{{cite web |
|
<ref name="natcom">{{cite journal |
|
|
|title=Real-time 3D analysis during electron tomography using tomviz |
|
|
|last1=Hovden |
|
|
|first1=Robert |
|
|
|date=1 August 2022 |
|
|
|journal= Nature Communications|volume=13 |
|
|
|issue=1 |
|
|
|page=4458 |
|
|
|doi=10.1038/s41467-022-32046-0 |
|
|
|pmid=35915070 |
|
|
|s2cid=251254217 |
|
|
|pmc=9343612|arxiv=2208.01850 |
|
|
|bibcode=2022NatCo..13.4458S |
|
|
}} |
|
⚫ |
</ref> |
|
⚫ |
<ref name="opensource.com">{{cite web |
|
|url=https://opensource.com/life/14/9/visualize-nanotechnology-3D-open-source-software |
|
|url=https://opensource.com/life/14/9/visualize-nanotechnology-3D-open-source-software |
|
|title=Visualizing nanotechnology in 3D with open source software |
|
|title=Visualizing nanotechnology in 3D with open source software |
| Line 23: |
Line 39: |
|
|date=22 September 2014 |
|
|date=22 September 2014 |
|
|publisher= OpenSource.com}} |
|
|publisher= OpenSource.com}} |
|
</ref> |
|
</ref> |
|
<ref name="tomviz0.9.0">{{cite web |
|
<ref name="tomvizDownload">{{cite web |
|
|url= https://blog.kitware.com/tomviz-0-9-0-released/ |
|
|url= https://tomviz.org/downloads/ |
|
|title=Tomviz 0.9.0 Released and M&M 2016 |
|
|title=Tomviz download page |
|
|author= Marcus D. Hanwell |
|
|date= February 8, 2021 |
|
|date= July 28, 2016 |
|
|publisher= Kitware}} |
|
⚫ |
</ref> |
|
|publisher= Kitware Blog}} |
|
| ⚫ |
</ref> |
|
| ⚫ |
<ref name="tomviz0.9.1">{{cite web |
|
|
|url= https://blog.kitware.com/segmentation-and-analysis-features-in-tomviz/ |
|
|
|title=New segmentation and analysis features coming to Tomviz |
|
|
|author1= Cory Quammen |
|
|
|author2= Marcus D. Hanwell |
|
|
|date= September 22, 2016 |
|
|
|publisher= Kitware Blog}} |
|
| ⚫ |
</ref> |
|
| ⚫ |
</references> |
|
|
|
|
|
|
⚫ |
</references> |
|
|
{{Image processing software}} |
|
] |
|
] |
|
] |
|
] |
In 2022 the tomviz platform was used to enable 3D visualization of specimens during an electron or cryo-electron tomography experiment. Tomviz is built with multi-threaded data analysis pipeline runs dynamic visualizations that update as new data is collected or reconstruction algorithms proceed. Scientists can interactively analyse 3D specimen structure concurrent with a tomographic reconstruction after or during an experiment.
