Misplaced Pages

COL16A1
Identifiers
Aliases	COL16A1, 447AA, FP1572, collagen type XVI alpha 1, collagen type XVI alpha 1 chain
External IDs	OMIM: 120326; MGI: 1095396; HomoloGene: 1397; GeneCards: COL16A1; OMA:COL16A1 - orthologs
Gene location (Human) Chr. Chromosome 1 (human) Band 1p35.2 Start 31,652,263 bp End 31,704,319 bp
Gene location (Mouse) Chr. Chromosome 4 (mouse) Band 4|4 D2.2 Start 129,941,633 bp End 129,993,076 bp
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in tibia cartilage tissue left ovary canal of the cervix sural nerve C1 segment right ovary right coronary artery body of uterus periodontal fiber Top expressed in body of femur umbilical cord calvaria vas deferens seminiferous tubule uterus lip spermatocyte efferent ductule dermis More reference expression data BioGPS More reference expression data
Gene ontology Molecular function integrin binding protein binding extracellular matrix structural constituent extracellular matrix structural constituent conferring tensile strength Cellular component extracellular region collagen type XVI trimer collagen endoplasmic reticulum lumen extracellular matrix extracellular space collagen-containing extracellular matrix Biological process cellular response to amino acid stimulus integrin-mediated signaling pathway female pregnancy positive regulation of focal adhesion assembly integrin activation cell adhesion extracellular matrix organization cell adhesion mediated by integrin Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 1307 107581 Ensembl ENSG00000084636 ENSMUSG00000040690 UniProt Q07092 Q8BLX7 RefSeq (mRNA) NM_001856 NM_028266 RefSeq (protein) NP_001847 NP_082542 NP_001391281 NP_001391282 Location (UCSC) Chr 1: 31.65 – 31.7 Mb Chr 4: 129.94 – 129.99 Mb PubMed search
Wikidata
View/Edit Human View/Edit Mouse

Collagen alpha-1(XVI) chain is a protein that in humans is encoded by the COL16A1 gene.

Function

This gene encodes the alpha chain of type XVI collagen, a member of the FACIT collagen family (fibril-associated collagens with interrupted helices). Members of this collagen family are found in association with fibril-forming collagens such as type I and II, and serve to maintain the integrity of the extracellular matrix. High levels of type XVI collagen have been found in fibroblasts and keratinocytes, and in smooth muscle and amnion.

References

1. ^ GRCh38: Ensembl release 89: ENSG00000084636 – Ensembl, May 2017
2. ^ GRCm38: Ensembl release 89: ENSMUSG00000040690 – Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. Pan TC, Zhang RZ, Mattei MG, Timpl R, Chu ML (Aug 1992). "Cloning and chromosomal location of human alpha 1(XVI) collagen". Proc Natl Acad Sci U S A. 89 (14): 6565–9. Bibcode:1992PNAS...89.6565P. doi:10.1073/pnas.89.14.6565. PMC 49542. PMID 1631157.
6. ^ "Entrez Gene: COL16A1 collagen, type XVI, alpha 1".

Further reading

• Yamaguchi N, Kimura S, McBride OW, Hori H, Yamada Y, Kanamori T, Yamakoshi H, Nagai Y (1993). "Molecular cloning and partial characterization of a novel collagen chain, alpha 1(XVI), consisting of repetitive collagenous domains and cysteine-containing non-collagenous segments". J. Biochem. 112 (6): 856–63. doi:10.1093/oxfordjournals.jbchem.a123989. PMID 1284248.
• Ratzinger S, Grässel S, Dowejko A, Reichert TE, Bauer RJ (2011). "Induction of type XVI collagen expression facilitates proliferation of oral cancer cells". Matrix Biology. 30 (2): 118–25. doi:10.1016/j.matbio.2011.01.001. PMID 21251976.
• Sires UI, Dublet B, Aubert-Foucher E, van der Rest M, Welgus HG (1995). "Degradation of the COL1 domain of type XIV collagen by 92-kDa gelatinase". J. Biol. Chem. 270 (3): 1062–7. doi:10.1074/jbc.270.3.1062. PMID 7836360.
• Tillet E, Mann K, Nischt R, Pan TC, Chu ML, Timpl R (1995). "Recombinant analysis of human alpha 1 (XVI) collagen. Evidence for processing of the N-terminal globular domain". Eur. J. Biochem. 228 (1): 160–8. doi:10.1111/j.1432-1033.1995.tb20245.x. PMID 7882999.
• Grässel S, Timpl R, Tan EM, Chu ML (1997). "Biosynthesis and processing of type XVI collagen in human fibroblasts and smooth muscle cells". Eur. J. Biochem. 242 (3): 576–84. doi:10.1111/j.1432-1033.1996.0576r.x. PMID 9022684.
• Ratzinger S, Grässel S, Dowejko A, Reichert TE, Bauer RJ (March 2011). "Induction of type XVI collagen expression facilitates proliferation of oral cancer cells". Matrix Biology. 30 (2): 118–25. doi:10.1016/j.matbio.2011.01.001. PMID 21251976.
• Kassner A, Hansen U, Miosge N, Reinhardt DP, Aigner T, Bruckner-Tuderman L, Bruckner P, Grässel S (2004). "Discrete integration of collagen XVI into tissue-specific collagen fibrils or beaded microfibrils". Matrix Biol. 22 (2): 131–43. doi:10.1016/S0945-053X(03)00008-8. PMID 12782140.
• Kassner A, Tiedemann K, Notbohm H, Ludwig T, Mörgelin M, Reinhardt DP, Chu ML, Bruckner P, Grässel S (2004). "Molecular structure and interaction of recombinant human type XVI collagen". J. Mol. Biol. 339 (4): 835–53. doi:10.1016/j.jmb.2004.03.042. PMID 15165854.
• Eble JA, Kassner A, Niland S, Mörgelin M, Grifka J, Grässel S (2006). "Collagen XVI harbors an integrin alpha1 beta1 recognition site in its C-terminal domains". J. Biol. Chem. 281 (35): 25745–56. doi:10.1074/jbc.M509942200. PMID 16754661.

External links

• "COL16A1 (collagen, type XVI, alpha 1)".

This article on a gene on human chromosome 1 is a stub. You can help Misplaced Pages by expanding it.

• v
• t
• e

• Genes on human chromosome 1
• Collagens
• Human chromosome 1 gene stubs