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FYB

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Protein-coding gene in the species Homo sapiensThis article is about the protein-coding gene. For the Poppy song, see Stagger (EP).
FYB1
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

1RI9, 2GTJ, 2GTO

Identifiers
AliasesFYB1
External IDsOMIM: 602731; MGI: 1346327; HomoloGene: 22664; GeneCards: FYB1; OMA:FYB1 - orthologs
Gene location (Human)
Chromosome 5 (human)
Chr.Chromosome 5 (human)
Chromosome 5 (human)Genomic location for FYB1Genomic location for FYB1
Band5p13.1Start39,105,252 bp
End39,274,528 bp
Gene location (Mouse)
Chromosome 15 (mouse)
Chr.Chromosome 15 (mouse)
Chromosome 15 (mouse)Genomic location for FYB1Genomic location for FYB1
Band15|15 A1Start6,552,334 bp
End6,692,794 bp
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • monocyte

  • blood

  • lymph node

  • bone marrow cells

  • trabecular bone

  • appendix

  • granulocyte

  • spleen

  • epithelium of colon

  • epithelium of nasopharynx
Top expressed in
  • granulocyte

  • thymus

  • spleen

  • lymph node

  • spermatid

  • mesenteric lymph nodes

  • blood

  • stroma of bone marrow

  • tibiofemoral joint

  • morula
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

2533

23880

Ensembl

ENSG00000082074

ENSMUSG00000022148

UniProt

O15117

O35601

RefSeq (mRNA)

NM_001243093
NM_001465
NM_199335
NM_001349333
NM_018594

NM_001278269
NM_011815

RefSeq (protein)

NP_001230022
NP_001456
NP_955367
NP_001336262
NP_061064

NP_001265198
NP_035945

Location (UCSC)Chr 5: 39.11 – 39.27 MbChr 15: 6.55 – 6.69 Mb
PubMed search
Wikidata
View/Edit HumanView/Edit Mouse

FYN binding protein (FYB-120/130), also known as FYB, ADAP (Adhesion and degranulation-promoting adapter protein), and SLAP-130 (SLP-76-associated phosphoprotein) is a protein that is encoded by the FYB gene in humans. The protein is expressed in T cells, monocytes, mast cells, macrophages, NK cells, but not B cells. FYB is a multifunctional protein involved in post-activation T cell signaling, lymphocyte cytokine production, cell adhesion, and actin remodeling.

Structure

Two isoforms of FYB with different lengths of 120 and 130 kDa (FYB-120 and FYB-130) exist. The 130kDa version has an extra insertion of 46 amino acids and is preferentially expressed in peripheral T cells. The FYB protein has a variety of binding domains: a non-structured N-terminal region, a proline-rich region, two SH3 domains, a FPPP-motif which binds the ENA/VASP protein family, and other tyrosine-based signaling motifs.

Function

FYB is critical for activation and proliferation of T-helper cells (CD4+) and required for chemokine signal transduction in T-helper cells and cytotoxic T cells (CD8+).

FYB regulates cytokine production in T cells as well as in activated NK cells through the FYN-ADAP axis. In T cells, after TCR stimulation, a unique region of FYB, pYDGI, allows phosphorylation of the protein by FYN. After being phosphorylated, ADAP can bind to Carma1, causing NF-κB translocation into the nucleus and cytokine production.

In mast cells, FYB regulates cell adhesion as well as degranulation. In T cells, FYB allows for cell adhesion and migration through blood vessels through the SLP-76-FYB-SKAP1 complex. After being phosphorylated by FYN, FYB can bind to SLP-76. This binding of FYB and SLP-76 regulates "outside-in signaling" or the transfer of signals from outside the cell to inside the cell by integrin. FYB can also bind to SKAP1, which allows SKAP1 to upregulate integrin activity through interactions with Rap1. The bacteria Yersinia can interfere with this pathway in macrophages through the secretion of YopH (Yersinia protein tyrosine phosphatase) into the macrophage, which de-phosphorylates FYB and SKAP1, leading to a decrease in integrin activity that results in an inhibition of adhesion, phagocytosis, and cytotoxicity.

FYB is also an important protein for actin remodeling of immune cells. This is thought to occur through the binding of proteins of the ENA/VASP protein family to the FPPPP-motif of the FYB protein.

References

  1. ^ GRCh38: Ensembl release 89: ENSG00000082074Ensembl, May 2017
  2. ^ GRCm38: Ensembl release 89: ENSMUSG00000022148Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. "Entrez Gene: FYB FYN binding protein (FYB-120/130)".
  6. Schraven B, Marie-Cardine A, Koretzky G (June 1997). "Molecular analysis of the fyn-complex: cloning of SKAP55 and SLAP-130, two novel adaptor proteins which associate with fyn and may participate in the regulation of T cell receptor-mediated signaling". Immunology Letters. 57 (1–3): 165–169. doi:10.1016/s0165-2478(97)00053-9. PMID 9232446.
  7. ^ Griffiths EK, Penninger JM (June 2002). "Communication between the TCR and integrins: role of the molecular adapter ADAP/Fyb/Slap". Current Opinion in Immunology. 14 (3): 317–322. doi:10.1016/s0952-7915(02)00334-5. PMID 11973129.
  8. ^ Wang H, Rudd CE (October 2008). "SKAP-55, SKAP-55-related and ADAP adaptors modulate integrin-mediated immune-cell adhesion". Trends in Cell Biology. 18 (10): 486–493. doi:10.1016/j.tcb.2008.07.005. PMC 3512129. PMID 18760924.
  9. ^ Gerbec ZJ, Thakar MS, Malarkannan S (2015-09-16). "The Fyn-ADAP Axis: Cytotoxicity Versus Cytokine Production in Killer Cells". Frontiers in Immunology. 6: 472. doi:10.3389/fimmu.2015.00472. PMC 4584950. PMID 26441977.
  10. ^ Zhang Y, Wang H (April 2012). "Integrin signalling and function in immune cells". Immunology. 135 (4): 268–275. doi:10.1111/j.1365-2567.2011.03549.x. PMC 3372743. PMID 22211918.
  11. ^ Dadwal N, Mix C, Reinhold A, Witte A, Freund C, Schraven B, Kliche S (2021-07-06). "The Multiple Roles of the Cytosolic Adapter Proteins ADAP, SKAP1 and SKAP2 for TCR/CD3 -Mediated Signaling Events". Frontiers in Immunology. 12: 703534. doi:10.3389/fimmu.2021.703534. PMC 8290198. PMID 34295339.

Further reading

PDB gallery
  • 1ri9: Structure of a helically extended SH3 domain of the T cell adapter protein ADAP 1ri9: Structure of a helically extended SH3 domain of the T cell adapter protein ADAP
  • 2gtj: Reduced form of ADAP hSH3-N-domain 2gtj: Reduced form of ADAP hSH3-N-domain
  • 2gto: Oxidized form of ADAP hSH3-N 2gto: Oxidized form of ADAP hSH3-N
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