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Natrinema

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(Redirected from Natrinema pallidum) Genus of Halobacteria

Natrinema
Scientific classification
Domain: Archaea
Kingdom: Euryarchaeota
Phylum: Euryarchaeota
Class: Halobacteria
Order: Natrialbales
Family: Natrialbaceae
Genus: Natrinema
McGenity et al. 1998
Type species
Natrinema pellirubrum
McGenity et al. 1998
Species

See text

Natrinema (common abbreviation Nnm.) is a genus of the Natrialbaceae.

Taxonomy

As of 2022, there are 18 species validly published in the genus Natrinema.

Natrinema is related to the genus Haloterrigena, established in 1999, resulting in confusion about taxon limits and several species apparently being assigned to the wrong genus. Based on phylogenomic analysis, eight species from Haloterrigena as well as Halopiger salifodinae were transferred to Natrinema in 2022.

Phylogeny

The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN) and National Center for Biotechnology Information (NCBI).

16S rRNA based LTP_10_2024 53 marker proteins based GTDB 09-RS220
Natrinema 2

N. hispanicum

N. limicola

Natrinema 3

N. versiforme

"N. marinum"

N. thermotolerans

N. mahii

N. saccharevitans

Natrinema s.s.

N. amylolyticum

N. salinisoli

N. salsiterrestre

N. gari

N. altunense

N. pellirubrum

N. pallidum

Natrinema 4

N. salaciae

N. soli

"N. zhouii"

N. ejinorense

N. longum (Cui et al. 2006) de la Haba et al. 2022

Natrinema 5

N. halophilum

"N. caseinilyticum"

"N. gelatinilyticum"

Natronorubrum

Natronolimnohabitans

Haloterrigena

Natronorubrum

Natrinema

N. salifodinae (Zhang et al. 2013) de la Haba et al. 2022

"N. marinum" Hu et al. 2023

N. halophilum Bao et al. 2022

"N. caseinilyticum" Hu et al. 2023

"N. gelatinilyticum" Hu et al. 2023

N. hispanicum (Romano et al. 2007) de la Haba et al. 2022

N. limicola (Cui et al. 2006) Rinke et al. 2020

N. mahii (Ding et al. 2017) de la Haba et al. 2022

N. saccharevitans (Xu et al. 2005) Rinke et al. 2020

N. pellirubrum McGenity et al. 1998

N. thermotolerans (Montalvo-Rodrguez et al. 2000) Rinke et al. 2020

N. salaciae Albuquerque et al. 2012

N. soli Rasooli et al. 2017

"N. zhouii" Hu et al. 2023

N. ejinorense Castillo et al. 2006

N. salinisoli Bao et al. 2022

N. salsiterrestre Straková et al. 2023

N. versiforme Xin et al. 2000

N. amylolyticum Bao et al. 2022

N. gari Tapingkae et al. 2008

N. altunense Xu et al. 2005

N. pallidum McGenity et al. 1998

Note: Unassigned Natrinema

  • "N. aidingensis" Liu et al. 2003a
  • "N. ajinwuensis" Mahansaria et al. 2018
  • "N. xinjiang" Habdin & Tohty 2005
  • "N. zhouii" Hu et al. 2023

See also

References

  1. ^ J.P. Euzéby. "Natrinema". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2023-10-10.
  2. ^ Sayers; et al. "Natrinema". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2023-10-10.
  3. Tindall, B. J. (2003). "Taxonomic problems arising in the genera Haloterrigena and Natrinema". Int. J. Syst. Evol. Microbiol. 53 (Pt 5): 1697–1698. Published online 28 February 2003. doi:10.1099/ijs.0.02529-0. PMID 13130070.
  4. de la Haba, Rafael; Minegishi, Hiroaki; Kamekura, Masahiro; Shimane, Yasuhiro; Ventosa, Antonio (2021). "Phylogenomics of Haloarchaea: The Controversy of the Genera Natrinema-Haloterrigena". Frontiers in Microbiology. 12: 740909. doi:10.3389/fmicb.2021.740909. PMC 8530250. PMID 34690986.
  5. "The LTP". Retrieved 10 December 2024.
  6. "LTP_all tree in newick format". Retrieved 10 December 2024.
  7. "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
  8. "GTDB release 09-RS220". Genome Taxonomy Database. Retrieved 10 May 2024.
  9. "ar53_r220.sp_label". Genome Taxonomy Database. Retrieved 10 May 2024.
  10. "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2024.

Further reading

Scientific journals

Scientific books

  • Gibbons, NE (1974). "Family V. Halobacteriaceae fam. nov.". In RE Buchanan; NE Gibbons (eds.). Bergey's Manual of Determinative Bacteriology (8th ed.). Baltimore: The Williams & Wilkins Co.
Prokaryotes: Archaea classification
Domain
Archaea
Bacteria
Eukaryota
(major groups
Excavata
Diaphoretickes
Hacrobia
Cryptista
Rhizaria
Alveolata
Stramenopiles
Plants
Amorphea
Amoebozoa
Opisthokonta
Animals
Fungi
Mesomycetozoea)
Euryarchaeota
(Methanobacteriati)
"Hadarchaeota"
  • "Hadarchaeia"
    • "Hadarchaeales"
  • "Persephonarchaeia"
"Hydrothermarchaeota"
  • "Hydrothermarchaeia"
    • "Hydrothermarchaeles"
Methanobacteriota
Halobacteriota
Thermoplasmatota
DPANN
(Nanobdellati)
Proteoarchaeota
TACK
(Thermoproteati)
Thermoproteota
Asgardarchaeota
(Promethearchaeati)
Promethearchaeota
Heimdallarchaeota
  • Heimdallarchaeia
    • "Gerdarchaeales"
    • "Heimdallarchaeales"
    • "Hodarchaeales"
    • "Kariarchaeales"
  • "Njordarchaeia"
  • "Sifarchaeia"
    • "Borrarchaeales"
    • "Sifarchaeales"
  • "Tyrarchaeia"
  • "Wukongarchaeia"
Taxon identifiers
Natrinema
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