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Pr/set domain 15

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Protein-coding gene in humans

PRDM15
Identifiers
AliasesPRDM15, C21orf83, PFM15, ZNF298, PR domain 15, PR/SET domain 15
External IDsOMIM: 617692; MGI: 1930121; HomoloGene: 56941; GeneCards: PRDM15; OMA:PRDM15 - orthologs
Gene location (Human)
Chromosome 21 (human)
Chr.Chromosome 21 (human)
Chromosome 21 (human)Genomic location for PRDM15Genomic location for PRDM15
Band21q22.3Start41,798,225 bp
End41,879,482 bp
Gene location (Mouse)
Chromosome 16 (mouse)
Chr.Chromosome 16 (mouse)
Chromosome 16 (mouse)Genomic location for PRDM15Genomic location for PRDM15
Band16|16 C4Start97,592,667 bp
End97,653,050 bp
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • sural nerve

  • mucosa of ileum

  • gonad

  • granulocyte

  • bone marrow cells

  • lymph node

  • testicle

  • tonsil

  • tendon of biceps brachii

  • tibialis anterior muscle
Top expressed in
  • superior cervical ganglion

  • hand

  • tail of embryo

  • cumulus cell

  • genital tubercle

  • lobe of prostate

  • otolith organ

  • granulocyte

  • lacrimal gland

  • utricle
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

63977

114604

Ensembl

ENSG00000141956

ENSMUSG00000014039

UniProt

P57071

E9Q8T2

RefSeq (mRNA)

NM_001040424
NM_001282934
NM_022115

NM_144789
NM_001359077
NM_001359078

RefSeq (protein)

NP_001035514
NP_001269863
NP_071398

NP_001346006
NP_001346007
NP_659038
NP_001390355
NP_001390356

NP_001390357
NP_001390358
NP_001390359
NP_001390360
NP_001390361
NP_001390366
NP_001390367

Location (UCSC)Chr 21: 41.8 – 41.88 MbChr 16: 97.59 – 97.65 Mb
PubMed search
Wikidata
View/Edit HumanView/Edit Mouse

PR/SET domain 15 is a protein that in humans is encoded by the PRDM15 gene.

PRDM15 safeguards naive pluripotency by transcriptionally regulating WNT and MAPK-ERK signaling.

PRDM15 modulates WNT and MAPK/ERK signaling by directly promoting the expression of Rspo1 (R-spondin1) and Spry1 (Sprouty1). Mzoughi et al., have shown that PRDM15 binds to the promoter region of both genes, inducing changes in the local chromatin to promote their transcription. In a second report, the same team has identified a loss-of-function mutation in patients with holoprosencephaly and microcephaly. They used mouse models and embryonic stem cells to uncover an unexpected link between Notch and WNT/PCP signaling and early embryo patterning. Both pathways are deregulated in PRDM15 mutants, leading to patterning defects and a spectrum of anterior brain malformations.

See also

References

  1. ^ GRCh38: Ensembl release 89: ENSG00000141956Ensembl, May 2017
  2. ^ GRCm38: Ensembl release 89: ENSMUSG00000014039Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. "Entrez Gene: PR/SET domain 15". Retrieved 2018-07-24.
  6. Mzoughi S, Zhang J, Hequet D, Teo SX, Fang H, Xing QR, et al. (September 2017). "PRDM15 safeguards naive pluripotency by transcriptionally regulating WNT and MAPK-ERK signaling". Nature Genetics. 49 (9): 1354–1363. doi:10.1038/ng.3922. PMID 28740264. S2CID 205355109.
  7. Mzoughi S, Di Tullio F, Low DH, Motofeanu CM, Ong SL, Wollmann H, et al. (2020). "PRDM15 loss of function links NOTCH and WNT/PCP signaling to patterning defects in holoprosencephaly". Science Advances. 6 (2): eaax9852. Bibcode:2020SciA....6.9852M. doi:10.1126/sciadv.aax9852. PMC 6954057. PMID 31950080.
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