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SYNE1
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 4DXR
Identifiers
Aliases	SYNE1, 8B, ARCA1, C6orf98, CPG2, EDMD4, MYNE1, Nesp1, SCAR8, dJ45H2.2, spectrin repeat containing nuclear envelope protein 1, KASH1, AMCM, AMC3
External IDs	OMIM: 608441; MGI: 1927152; HomoloGene: 52329; GeneCards: SYNE1; OMA:SYNE1 - orthologs
Gene location (Human) Chr. Chromosome 6 (human) Band 6q25.2 Start 152,121,687 bp End 152,637,801 bp
Gene location (Mouse) Chr. Chromosome 10 (mouse) Band 10|10 A1 Start 5,020,917 bp End 5,551,482 bp
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in cerebellar hemisphere right hemisphere of cerebellum Achilles tendon nucleus accumbens sural nerve left ovary right lung middle temporal gyrus caudate nucleus right frontal lobe Top expressed in cerebellar cortex lobe of cerebellum cerebellar vermis granulocyte habenula Region I of hippocampus proper superior frontal gyrus dentate gyrus primary visual cortex dentate gyrus of hippocampal formation granule cell More reference expression data BioGPS n/a
Gene ontology Molecular function actin filament binding protein binding identical protein binding actin binding lamin binding protein homodimerization activity enzyme binding RNA binding Cellular component cytoplasm integral component of membrane postsynaptic membrane Golgi apparatus nuclear membrane nuclear envelope membrane sarcomere nucleoplasm meiotic nuclear membrane microtubule tethering complex nuclear outer membrane cytoskeleton nucleus P-body nucleolus Biological process nuclear matrix anchoring at nuclear membrane Golgi organization nucleus organization muscle cell differentiation spermatogenesis cell differentiation Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 23345 64009 Ensembl ENSG00000131018 ENSMUSG00000096054 UniProt Q8NF91 Q6ZWR6 RefSeq (mRNA) NM_001099267 NM_001134379 NM_015293 NM_033071 NM_133650 NM_182961 NM_001347701 NM_001347702 NM_001079686 NM_022027 NM_153399 NM_001347711 NM_001347732 RefSeq (protein) NP_001334630 NP_001334631 NP_149062 NP_892006 NP_001073154 NP_001334640 NP_001334661 NP_071310 NP_700448 Location (UCSC) Chr 6: 152.12 – 152.64 Mb Chr 10: 5.02 – 5.55 Mb PubMed search
Wikidata
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Enaptin also known as nesprin-1 or synaptic nuclear envelope protein 1 (syne-1) is an actin-binding protein that in humans that is encoded by the SYNE1 gene.

Function

This gene encodes a spectrin repeat containing protein expressed in skeletal and smooth muscle, and peripheral blood lymphocytes, that localizes to the nuclear membrane.

Enaptin is a nuclear envelope protein found in human myocytes and synapses, which is made up of 8,797 amino acids. Enaptin is involved in the maintenance of nuclear organization and structural integrity, tethering the cell nucleus to the cytoskeleton by interacting with the nuclear envelope and with F-actin in the cytoplasm.

Structure

Enaptin contains a coiled alpha-helical region and a large beta-sheet region in the upper part and at least four alpha-helices spliced together, indicating the similarity with collagen. The protein is made up of three main parts, as can be seen in the diagram: cytoplasmic (1-8746), anchor for type IV membrane protein (8747-8767), and the sequence for perinuclear space (8768-8797). The region in the perinuclear space contains a KASH domain.

The molecular weight of the mature protein is approximately 1,011 kDa, and it has a theoretical pI of 5.38. The protein's chemical formula is C₄₄₁₈₉H₇₁₂₅₂N₁₂₄₂₈O₁₄₀₀₇S₃₂₁. It has a theoretical Instability Index (II) of 51.63, indicating that it would be unstable in a test tube. The protein's in vivo half-life, the time it takes for half of the amount of protein in a cell to disappear after its synthesis in the cell, is predicted to be approximately 30 hours (in mammalian reticulocytes).

Clinical significance

Mutations in this gene have been associated with autosomal recessive spinocerebellar ataxia 8, also referred to as autosomal recessive cerebellar ataxia type 1 or recessive ataxia of Beauce.

References

1. ^ GRCh38: Ensembl release 89: ENSG00000131018 – Ensembl, May 2017
2. ^ GRCm38: Ensembl release 89: ENSMUSG00000096054 – Ensembl, May 2017
3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
5. ^ "Entrez Gene: Spectrin repeat containing, nuclear envelope 1".
6. "Compute pI/Mw for SYNE1_HUMAN (Q8NF91)". ExPASy. Swiss Institute of Bioinformatics.
7. "ProtParam for SYNE1_HUMAN (Q8NF91)". ExPASy. Swiss Institute of Bioinformatics.

Further reading

• Zhang Q, Skepper JN, Yang F, Davies JD, Hegyi L, Roberts RG, Weissberg PL, Ellis JA, Shanahan CM (December 2001). "Nesprins: a novel family of spectrin-repeat-containing proteins that localize to the nuclear membrane in multiple tissues" (PDF). J. Cell Sci. 114 (Pt 24): 4485–98. doi:10.1242/jcs.114.24.4485. PMID 11792814.
• Grady RM, Starr DA, Ackerman GL, Sanes JR, Han M (March 2005). "Syne proteins anchor muscle nuclei at the neuromuscular junction". Proc. Natl. Acad. Sci. U.S.A. 102 (12): 4359–64. doi:10.1073/pnas.0500711102. PMC 555524. PMID 15749817.

External links

• GeneReview/NCBI/NIH/UW entry on SYNE1-Related Autosomal Recessive Cerebellar Ataxia
• Overview of all the structural information available in the PDB for UniProt: Q8NF91 (Nesprin-1) at the PDBe-KB.

This article incorporates text from the United States National Library of Medicine, which is in the public domain.

• Genes on human chromosome 6
• Proteins