(Redirected from Sphingobacteria )
Phylum of bacteria
For Bacteroidota class, see Sphingobacteriia .
The FCB group is a superphylum of bacteria named after the main member phyla Fibrobacterota , Chlorobiota , and Bacteroidota . The members are considered to form a clade due to a number of conserved signature indels .
Cavalier-Smith calls the equivalent grouping a phylum by the name of Sphingobacteria . It contains the classes Chlorobiota , Fibrobacterota , Bacteroidota , and Flavobacteria . However, this megaclassification is not followed by the larger scientific community.
An analogous situation is seen with the PVC group/Planctobacteria .
The Bacteroidota–Chlorobiota group in brown is visible on this 2016 tree of life using ribosomal protein sequences
Notes
See also
References
Cavalier-Smith, T. (1987). The origin of cells: a symbiosis between genes, catalysts and membranes. Cold Spring Harbor Symposia on Quantitative Biology 52, 805-24, , .
^ Gupta, R. S. (2004). "The Phylogeny and Signature Sequences Characteristics of Fibrobacteres, Chlorobi, and Bacteroidetes". Critical Reviews in Microbiology . 30 (2): 123–143. doi :10.1080/10408410490435133 . PMID 15239383 . S2CID 24565648 .
Cavalier-Smith T (2006). "Rooting the tree of life by transition analyses" . Biol. Direct . 1 : 19. doi :10.1186/1745-6150-1-19 . PMC 1586193 . PMID 16834776 .
Krieg, N.R.; Ludwig, W.; Whitman, W.B.; Hedlund, B.P.; Paster, B.J.; Staley, J.T.; Ward, N.; Brown, D.; Parte, A. (November 24, 2010) . George M. Garrity (ed.). The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes . Bergey's Manual of Systematic Bacteriology. Vol. 4 (2nd ed.). New York: Springer. p. 908. ISBN 978-0-387-95042-6 . British Library no. GBA561951.
Classification in LPSN ; Parte, Aidan C.; Sardà Carbasse, Joaquim; Meier-Kolthoff, Jan P.; Reimer, Lorenz C.; Göker, Markus (1 November 2020). "List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ" . International Journal of Systematic and Evolutionary Microbiology . 70 (11): 5607–5612. doi :10.1099/ijsem.0.004332 .
Emiley A Eloe-Fadrosh et al. 2017, Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs. Nature Communications 7 · January 2016 DOI: 10.1038/ncomms1047
Kirkegaard, Rasmus Hansen; Dueholm, Morten Simonsen; McIlroy, Simon Jon; Nierychlo, Marta; Karst, Søren Michael; Albertsen, Mads; Nielsen, Per Halkjær (October 2016). "Genomic insights into members of the candidate phylum Hyd24-12 common in mesophilic anaerobic digesters" . The ISME Journal . 10 (10): 2352–2364. doi :10.1038/ismej.2016.43 . ISSN 1751-7370 . PMC 5030696 . PMID 27058503 .
"The LTP" . Retrieved 23 February 2021.
"LTP_all tree in newick format" . Retrieved 23 February 2021.
"LTP_12_2021 Release Notes" (PDF). Retrieved 23 February 2021.
"GTDB release 07-RS207" . Genome Taxonomy Database . Retrieved 20 June 2022.
"ar53_r207.sp_label" . Genome Taxonomy Database . Retrieved 20 June 2022.
"Taxon History" . Genome Taxonomy Database . Retrieved 20 June 2022.
Hug, Laura A.; Baker, Brett J.; Anantharaman, Karthik; Brown, Christopher T.; Probst, Alexander J.; Castelle, Cindy J.; Butterfield, Cristina N.; Hernsdorf, Alex W.; Amano, Yuki; Ise, Kotaro; Suzuki, Yohey; Dudek, Natasha; Relman, David A.; Finstad, Kari M.; Amundson, Ronald; Thomas, Brian C.; Banfield, Jillian F. (11 April 2016). "A new view of the tree of life" . Nature Microbiology . 1 (5): 16048. doi :10.1038/nmicrobiol.2016.48 . PMID 27572647 .
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