Viroinformatics - Misplaced Pages

Bioinformatics for viruses

Viroinformatics is an amalgamation of virology with bioinformatics, involving the application of information and communication technology in various aspects of viral research. Currently there are more than 100 web servers and databases harboring knowledge regarding different viruses as well as distinct applications concerning diversity analysis, viral recombination, RNAi studies, drug design, protein–protein interaction, structural analysis etc.

References

Sharma, Deepak; Priyadarshini, Pragya; Vrati, Sudhanshu (2015). "Unraveling the Web of Viroinformatics: Computational Tools and Databases in Virus Research". Journal of Virology. 89 (3): 1489–1501. doi:10.1128/JVI.02027-14. PMC 4300767. PMID 25428870.

External links

v t e Bioinformatics
Databases	Sequence databases: GenBank, European Nucleotide Archive, DNA Data Bank of Japan and China National GeneBank Secondary databases: UniProt, database of protein sequences grouping together Swiss-Prot, TrEMBL and Protein Information Resource Other databases: BioNumbers, Protein Data Bank, Ensembl, InterPro, KEGG, and Gene Ontology Specialised genomic databases: BOLD, Saccharomyces Genome Database, FlyBase, VectorBase, WormBase, Rat Genome Database, PHI-base, Arabidopsis Information Resource, GISAID and Zebrafish Information Network
Software	BLAST Bowtie Clustal EMBOSS HMMER MUSCLE PANGOLIN SAMtools SOAP suite TopHat
Other	Server: ExPASy Rosalind (education platform)
Institutions	Broad Institute Computational Biology Department (CBD) Microsoft Research - University of Trento Centre for Computational and Systems Biology (COSBI) Database Center for Life Science (DBCLS) DNA Data Bank of Japan (DDBJ) European Bioinformatics Institute (EMBL-EBI) European Molecular Biology Laboratory (EMBL) Flatiron Institute J. Craig Venter Institute (JCVI) Max Planck Institute of Molecular Cell Biology and Genetics (MPI-CBG) US National Center for Biotechnology Information (NCBI) Japanese Institute of Genetics Netherlands Bioinformatics Centre (NBIC) Philippine Genome Center (PGC) Scripps Research Swiss Institute of Bioinformatics (SIB) Wellcome Sanger Institute Whitehead Institute
Organizations	African Society for Bioinformatics and Computational Biology (ASBCB) Australia Bioinformatics Resource (EMBL-AR) European Molecular Biology network (EMBnet) International Nucleotide Sequence Database Collaboration (INSDC) International Society for Biocuration (ISB) International Society for Computational Biology (ISCB) Student Council (ISCB-SC) Institute of Genomics and Integrative Biology (CSIR-IGIB) Japanese Society for Bioinformatics (JSBi)
Meetings	Basel Computational Biology Conference‎ () European Conference on Computational Biology (ECCB) Intelligent Systems for Molecular Biology (ISMB) International Conference on Bioinformatics (InCoB) International Conference on Computational Intelligence Methods for Bioinformatics and Biostatistics (CIBB) ISCB Africa ASBCB Conference on Bioinformatics Pacific Symposium on Biocomputing (PSB) Research in Computational Molecular Biology (RECOMB)
File formats	CRAM format FASTA format FASTQ format NeXML format Nexus format Pileup format SAM format Stockholm format VCF format GFF format GTF format
Related topics	Computational biology List of biobanks List of biological databases Molecular phylogenetics Sequencing Sequence database Sequence alignment
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