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BCKDHA

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Protein-coding gene in the species Homo sapiens
BCKDHA
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

1DTW, 1OLS, 1OLU, 1OLX, 1U5B, 1V11, 1V16, 1V1M, 1V1R, 1WCI, 1X7W, 1X7X, 1X7Y, 1X7Z, 1X80, 2BEU, 2BEV, 2BEW, 2BFB, 2BFC, 2BFD, 2BFE, 2BFF, 2J9F

Identifiers
AliasesBCKDHA, BCKDE1A, MSU, MSUD1, OVD1A, branched chain keto acid dehydrogenase E1, alpha polypeptide, branched chain keto acid dehydrogenase E1 subunit alpha
External IDsOMIM: 608348; MGI: 107701; HomoloGene: 569; GeneCards: BCKDHA; OMA:BCKDHA - orthologs
Gene location (Human)
Chromosome 19 (human)
Chr.Chromosome 19 (human)
Chromosome 19 (human)Genomic location for BCKDHAGenomic location for BCKDHA
Band19q13.2Start41,397,808 bp
End41,425,002 bp
Gene location (Mouse)
Chromosome 7 (mouse)
Chr.Chromosome 7 (mouse)
Chromosome 7 (mouse)Genomic location for BCKDHAGenomic location for BCKDHA
Band7|7 A3Start25,329,371 bp
End25,358,406 bp
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • right adrenal gland

  • apex of heart

  • right adrenal cortex

  • right lobe of liver

  • left adrenal gland

  • left adrenal cortex

  • left ventricle

  • gastrocnemius muscle

  • muscle of thigh

  • body of stomach
Top expressed in
  • right kidney

  • muscle of thigh

  • brown adipose tissue

  • right ventricle

  • human kidney

  • lacrimal gland

  • left lobe of liver

  • myocardium of ventricle

  • proximal tubule

  • salivary gland
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

593

12039

Ensembl

ENSG00000248098

ENSMUSG00000060376

UniProt

P12694

P50136

RefSeq (mRNA)

NM_001164783
NM_000709

NM_007533

RefSeq (protein)

NP_000700
NP_001158255

n/a

Location (UCSC)Chr 19: 41.4 – 41.43 MbChr 7: 25.33 – 25.36 Mb
PubMed search
Wikidata
View/Edit HumanView/Edit Mouse

A 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial is an enzyme that in humans is encoded by the BCKDHA gene.

BCKDHA is a coding gene that is part of the BCKD complex (branched-chain alpha-keto acid dehydrogenase).

Discovery

BCKDHA was discovered by John Menkes in 1954. After he had seen a family with four children die only a few months after birth, he found that their urine smelled sweet like maple syrup. While he was not the one to discover the specific gene, he did discover the maple syrup urine disease(MSUD). The BCKD complex is made up of three different catalytic pieces. It was in 1960 when Dancis discovered the gene itself, but this was from Menkes discovering of the disease leading to further investigation of its origin. He found that looking at the branched-chain amino acids and their corresponding alpha-keto acids in turn aided in the realization that they were pathogenetic compounds. Dancis was the one to specifically track down the enzymatic defect in (MSUD) by finding what gene in the pool of human chromosomes was defecting the urine. He found the gene on the level of the decarboxylation of the branched-chain amino acids.

Gene location

The cytogenetic location of BCKDHA is on the human chromosome 19, specifically on the cytogenetic band at 19q13.2. This the long arm (q) of the chromosome 19 at 13.2. Looking at the molecular location, the base pairs 41,397,789 to 41,425,005 are on chromosome 19. The cellular localization of this gene is within the mitochondrion matrix.

Function

The second major step in the catabolism of the branched-chain amino acids (isoleucine, leucine, and valine) is catalyzed by the branched-chain alpha-keto acid dehydrogenase complex (BCKD; EC 1.2.4.4), an inner-mitochondrial enzyme complex that consists of 3 catalytic components: a heterotetrameric (alpha2, beta2) branched-chain alpha-keto acid decarboxylase (E1), a homo-24-meric dihydrolipoyl transacylase (E2; MIM 248610), and a homodimeric dihydrolipoamide dehydrogenase (E3; MIM 238331). The reaction is irreversible and constitutes the first committed step in BCAA oxidation. The complex also contains 2 regulatory enzymes, a kinase and a phosphorylase. The BCKDHA gene encodes the alpha subunit of E1, and the BCKDHB gene (MIM 248611) encodes the beta subunit of E1.

The normal function of the BCKDHA gene is to provide instructions for making the alpha subunit of the branched-chain alpha-keto dehydrogenase (BCKD) enzyme complex. The alpha subunit is one part of the BCKD enzyme complex. Two beta subunits are produced from the BCKDHB gene and connect to two alpha subunits to form the E1 (decarboxylase) component. The BCKD enzyme complex catalyzes one step in breaking down amino acids. Those amino acids being leucine, isoleucine, and valine. The BCKD enzyme complex can be found in the mitochondria, an organelle known as the powerhouse of the cell. All three amino acids can be found in protein-rich foods and when broken down, they can be used for energy. Mutations in the BCKDHA gene can lead to maple syrup urine disease.

Clinical significance

Mutations in the BCKDHA gene occur due to single point mutations in the “alpha subunit of the BCKD enzyme complex”. Earlier cases of this disease show the mutation more frequently occurred by replacing the amino acid tyrosine. This amino acid was replaced with asparagine. The complication with mutations in the BCKDHA gene is that it disrupts the normal function of the BCKD enzyme complex, preventing the gene from going about its normal functions. Thus, the BCKDHA gene would not be able to break down leucine, isoleucine, and valine. When these byproducts start to accumulate it produces a toxic environment for cells and tissues, specifically in the nervous system. This can lead to seizures, developmental delay, but most importantly maple syrup urine disease.

The BCKDHA has been pinpointed in people with maple syrup urine disease, due to over 80 mutations occurring in that gene. Severe symptoms arise from these mutations and cause the disease which shows soon after birth. Due to the sweet odor from the urine, the disease was termed maple syrup urine disease. The disease causes loss of appetite, nausea, lethargy, and delayed development.

BCKDHA mutation: maple syrup urine disease

Maple syrup urine disease is an “autosomal recessive inborn error of metabolism. Meaning, as stated earlier, that there is a defect (i.e. error) in the single gene that codes for an enzyme. These enzymes promote conversions for various substrates into products. In terms of maple syrup urine disease, the enzyme defect occurs in the metabolic pathway of the “branched-chain amino acids” leucine, isoleucine, and valine. The buildup of these amino acids lead to “encephalopathy and progressive neurodegeneration”; along with other complications.

There are five forms of maple syrup urine disease: classic, intermediate, intermittent, thiamine-responsive and E3 deficient. The form of disease is dependent upon clinical prognosis, dietary protein tolerance, and thiamine response and level of enzyme activity. Intermediate maple syrup urine disease is a milder form of maple syrup urine disease because it persistently raises branched-chain amino acids and some keto-acid chains. Individuals with this disease have a partial BCKDHA enzyme deficiency. Meaning that it shows up sporadically or reacts to dietary thiamine therapy.

References

  1. ^ GRCh38: Ensembl release 89: ENSG00000248098Ensembl, May 2017
  2. ^ GRCm38: Ensembl release 89: ENSMUSG00000060376Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ "Entrez Gene: BCKDHA branched chain keto acid dehydrogenase E1, alpha polypeptide".
  6. ^ Reference, Genetics Home. "BCKDHA gene". Genetics Home Reference. Retrieved 2018-11-14.
  7. Reference, Genetics Home. "BCKDHA gene". Genetics Home Reference. Retrieved 2018-11-15.
  8. "BCKDHA branched chain keto acid dehydrogenase E1, alpha polypeptide". NCBI. Retrieved 12 April 2019.
  9. ^ Database, GeneCards Human Gene. "BCKDHA Gene - GeneCards | ODBA Protein | ODBA Antibody". www.genecards.org. Retrieved 2018-11-14.
  10. Database, GeneCards Human Gene. "BCKDHA Gene - GeneCards | ODBA Protein | ODBA Antibody". www.genecards.org. Retrieved 2018-11-15.

Further reading

External links

PDB gallery
  • 1dtw: HUMAN BRANCHED-CHAIN ALPHA-KETO ACID DEHYDROGENASE 1dtw: HUMAN BRANCHED-CHAIN ALPHA-KETO ACID DEHYDROGENASE
  • 1ols: ROLES OF HIS291-ALPHA AND HIS146-BETA' IN THE REDUCTIVE ACYLATION REACTION CATALYZED BY HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE 1ols: ROLES OF HIS291-ALPHA AND HIS146-BETA' IN THE REDUCTIVE ACYLATION REACTION CATALYZED BY HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE
  • 1olu: ROLES OF HIS291-ALPHA AND HIS146-BETA' IN THE REDUCTIVE ACYLATION REACTION CATALYZED BY HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE 1olu: ROLES OF HIS291-ALPHA AND HIS146-BETA' IN THE REDUCTIVE ACYLATION REACTION CATALYZED BY HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE
  • 1olx: ROLES OF HIS291-ALPHA AND HIS146-BETA' IN THE REDUCTIVE ACYLATION REACTION CATALYZED BY HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE 1olx: ROLES OF HIS291-ALPHA AND HIS146-BETA' IN THE REDUCTIVE ACYLATION REACTION CATALYZED BY HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE
  • 1u5b: Crystal structure of the human mitochondrial branched-chain alpha-ketoacid dehydrogenase 1u5b: Crystal structure of the human mitochondrial branched-chain alpha-ketoacid dehydrogenase
  • 1v11: CROSSTALK BETWEEN COFACTOR BINDING AND THE PHOSPHORYLATION LOOP CONFORMATION IN THE BCKD MACHINE 1v11: CROSSTALK BETWEEN COFACTOR BINDING AND THE PHOSPHORYLATION LOOP CONFORMATION IN THE BCKD MACHINE
  • 1v16: CROSSTALK BETWEEN COFACTOR BINDING AND THE PHOSPHORYLATION LOOP CONFORMATION IN THE BCKD MACHINE 1v16: CROSSTALK BETWEEN COFACTOR BINDING AND THE PHOSPHORYLATION LOOP CONFORMATION IN THE BCKD MACHINE
  • 1v1m: CROSSTALK BETWEEN COFACTOR BINDING AND THE PHOSPHORYLATION LOOP CONFORMATION IN THE BCKD MACHINE 1v1m: CROSSTALK BETWEEN COFACTOR BINDING AND THE PHOSPHORYLATION LOOP CONFORMATION IN THE BCKD MACHINE
  • 1v1r: CROSSTALK BETWEEN COFACTOR BINDING AND THE PHOSPHORYLATION LOOP CONFORMATION IN THE BCKD MACHINE 1v1r: CROSSTALK BETWEEN COFACTOR BINDING AND THE PHOSPHORYLATION LOOP CONFORMATION IN THE BCKD MACHINE
  • 1wci: REACTIVITY MODULATION OF HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE BY AN INTERNAL MOLECULAR SWITCH 1wci: REACTIVITY MODULATION OF HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE BY AN INTERNAL MOLECULAR SWITCH
  • 1x7w: Crystal structure of the human mitochondrial branched-chain alpha-ketoacid dehydrogenase 1x7w: Crystal structure of the human mitochondrial branched-chain alpha-ketoacid dehydrogenase
  • 1x7x: Crystal structure of the human mitochondrial branched-chain alpha-ketoacid dehydrogenase 1x7x: Crystal structure of the human mitochondrial branched-chain alpha-ketoacid dehydrogenase
  • 1x7y: Crystal structure of the human mitochondrial branched-chain alpha-ketoacid dehydrogenase 1x7y: Crystal structure of the human mitochondrial branched-chain alpha-ketoacid dehydrogenase
  • 1x7z: Crystal structure of the human mitochondrial branched-chain alpha-ketoacid dehydrogenase 1x7z: Crystal structure of the human mitochondrial branched-chain alpha-ketoacid dehydrogenase
  • 1x80: Crystal structure of the human mitochondrial branched-chain alpha-ketoacid dehydrogenase 1x80: Crystal structure of the human mitochondrial branched-chain alpha-ketoacid dehydrogenase
  • 2beu: REACTIVITY MODULATION OF HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE BY AN INTERNAL MOLECULAR SWITCH 2beu: REACTIVITY MODULATION OF HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE BY AN INTERNAL MOLECULAR SWITCH
  • 2bev: REACTIVITY MODULATION OF HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE BY AN INTERNAL MOLECULAR SWITCH 2bev: REACTIVITY MODULATION OF HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE BY AN INTERNAL MOLECULAR SWITCH
  • 2bew: REACTIVITY MODULATION OF HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE BY AN INTERNAL MOLECULAR SWITCH 2bew: REACTIVITY MODULATION OF HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE BY AN INTERNAL MOLECULAR SWITCH
  • 2bfb: REACTIVITY MODULATION OF HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE BY AN INTERNAL MOLECULAR SWITCH 2bfb: REACTIVITY MODULATION OF HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE BY AN INTERNAL MOLECULAR SWITCH
  • 2bfc: REACTIVITY MODULATION OF HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE BY AN INTERNAL MOLECULAR SWITCH 2bfc: REACTIVITY MODULATION OF HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE BY AN INTERNAL MOLECULAR SWITCH
  • 2bfd: REACTIVITY MODULATION OF HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE BY AN INTERNAL MOLECULAR SWITCH 2bfd: REACTIVITY MODULATION OF HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE BY AN INTERNAL MOLECULAR SWITCH
  • 2bfe: REACTIVITY MODULATION OF HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE BY AN INTERNAL MOLECULAR SWITCH 2bfe: REACTIVITY MODULATION OF HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE BY AN INTERNAL MOLECULAR SWITCH
  • 2bff: REACTIVITY MODULATION OF HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE BY AN INTERNAL MOLECULAR SWITCH 2bff: REACTIVITY MODULATION OF HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE BY AN INTERNAL MOLECULAR SWITCH
  • 2j9f: HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE-DECARBOXYLASE E1B 2j9f: HUMAN BRANCHED-CHAIN ALPHA-KETOACID DEHYDROGENASE-DECARBOXYLASE E1B
Enzymes: multienzyme complexes
Photosynthesis
Dehydrogenase
Other
Aldehyde/oxo oxidoreductases (EC 1.2)
1.2.1: NAD or NADP
1.2.2: cytochrome
1.2.3: oxygen
1.2.4: disulfide
1.2.7: iron–sulfur protein
Kinases: Serine/threonine-specific protein kinases (EC 2.7.11-12)
Serine/threonine-specific protein kinases (EC 2.7.11.1-EC 2.7.11.20)
Non-specific serine/threonine protein kinases (EC 2.7.11.1)
Pyruvate dehydrogenase kinase (EC 2.7.11.2)
Dephospho-(reductase kinase) kinase (EC 2.7.11.3)
3-methyl-2-oxobutanoate dehydrogenase (acetyl-transferring) kinase (EC 2.7.11.4)
(isocitrate dehydrogenase (NADP+)) kinase (EC 2.7.11.5)
(tyrosine 3-monooxygenase) kinase (EC 2.7.11.6)
Myosin-heavy-chain kinase (EC 2.7.11.7)
Fas-activated serine/threonine kinase (EC 2.7.11.8)
Goodpasture-antigen-binding protein kinase (EC 2.7.11.9)
  • -
IκB kinase (EC 2.7.11.10)
cAMP-dependent protein kinase (EC 2.7.11.11)
cGMP-dependent protein kinase (EC 2.7.11.12)
Protein kinase C (EC 2.7.11.13)
Rhodopsin kinase (EC 2.7.11.14)
Beta adrenergic receptor kinase (EC 2.7.11.15)
G-protein coupled receptor kinases (EC 2.7.11.16)
Ca2+/calmodulin-dependent (EC 2.7.11.17)
Myosin light-chain kinase (EC 2.7.11.18)
Phosphorylase kinase (EC 2.7.11.19)
Elongation factor 2 kinase (EC 2.7.11.20)
Polo kinase (EC 2.7.11.21)
Serine/threonine-specific protein kinases (EC 2.7.11.21-EC 2.7.11.30)
Polo kinase (EC 2.7.11.21)
Cyclin-dependent kinase (EC 2.7.11.22)
(RNA-polymerase)-subunit kinase (EC 2.7.11.23)
Mitogen-activated protein kinase (EC 2.7.11.24)
MAP3K (EC 2.7.11.25)
Tau-protein kinase (EC 2.7.11.26)
(acetyl-CoA carboxylase) kinase (EC 2.7.11.27)
  • -
Tropomyosin kinase (EC 2.7.11.28)
  • -
Low-density-lipoprotein receptor kinase (EC 2.7.11.29)
  • -
Receptor protein serine/threonine kinase (EC 2.7.11.30)
Dual-specificity kinases (EC 2.7.12)
MAP2K
Enzymes
Activity
Regulation
Classification
Kinetics
Types
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