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Tripeptidyl peptidase I

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(Redirected from Tripeptidyl-peptidase I) Protein-coding gene in the species Homo sapiens
TPP1
Available structures
PDBOrtholog search: PDBe RCSB
List of PDB id codes

3EDY, 3EE6

Identifiers
AliasesTPP1, CLN2, LPIC, SCAR7, TPP-1, GIG1, Tripeptidyl peptidase I, tripeptidyl peptidase 1
External IDsOMIM: 607998; MGI: 1336194; HomoloGene: 335; GeneCards: TPP1; OMA:TPP1 - orthologs
Gene location (Human)
Chromosome 11 (human)
Chr.Chromosome 11 (human)
Chromosome 11 (human)Genomic location for TPP1Genomic location for TPP1
Band11p15.4Start6,612,768 bp
End6,619,448 bp
Gene location (Mouse)
Chromosome 7 (mouse)
Chr.Chromosome 7 (mouse)
Chromosome 7 (mouse)Genomic location for TPP1Genomic location for TPP1
Band7 E3|7 55.97 cMStart105,394,018 bp
End105,401,442 bp
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • retinal pigment epithelium

  • dorsal motor nucleus of vagus nerve

  • inferior olivary nucleus

  • right adrenal cortex

  • germinal epithelium

  • visceral pleura

  • stromal cell of endometrium

  • left adrenal gland

  • spleen

  • parietal pleura
Top expressed in
  • choroid plexus of fourth ventricle

  • calvaria

  • stroma of bone marrow

  • tibiofemoral joint

  • retinal pigment epithelium

  • transitional epithelium of urinary bladder

  • decidua

  • right kidney

  • ciliary body

  • right lung
More reference expression data
BioGPS




More reference expression data
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

1200

12751

Ensembl

ENSG00000166340

ENSMUSG00000030894

UniProt

O14773

O89023

RefSeq (mRNA)

NM_000391

NM_009906

RefSeq (protein)

NP_000382

NP_034036

Location (UCSC)Chr 11: 6.61 – 6.62 MbChr 7: 105.39 – 105.4 Mb
PubMed search
Wikidata
View/Edit HumanView/Edit Mouse

Tripeptidyl-peptidase 1, also known as Lysosomal pepstatin-insensitive protease, is an enzyme that in humans is encoded by the TPP1 gene, also known as CLN2. TPP1 should not be confused with the TPP1 shelterin protein which protects telomeres and is encoded by the ACD gene. Mutations in the TPP1 gene leads to late-infantile neuronal ceroid lipofuscinosis.

Structure

Gene

The human gene TPP1 encodes a member of the sedolisin family of serine protease enzymes. The human gene has 13 exons and locates at the chromosome band 11p15. It is also known as CLN2, due to the relation to the disease.

Protein

The human TPP1 is 61kDa in size and composed of 563 amino acids. An isoform of 34.5kDa and 320 amino acids is generated by alternative splicing and a peptide fragment of 1-243 amino acid is missing. TPP1 contains a globular structure with a subtilisin-like fold, a Ser475-Glu272-Asp360 catalytic triad. It also contains an octahedrally coordinated Ca-binding site that are characteristic features of the S53 sedolisin family of peptidases. Unlike other S53 peptidases, it has steric constraints on the P4 substrate pocket, which might contribute to its preferential cleavage of tripeptides from the unsubstituted N-terminus of proteins. Two alternative conformations of the catalytic Asp276 are associated with the activation status of TPP1.

Function

High expression of TPP1 is found in bone marrow, placenta, lung, pineal and lymphocytes. The protease functions in the lysosome to cleave N-terminal tripeptides from substrates and has weaker endopeptidase activity. It is synthesized as a catalytically inactive enzyme which is activated and autoproteolyzed upon acidification.

Clinical significance

The neuronal ceroid lipofuscinoses (NCLs) are a group of inherited neurodegenerative disorders with pathological phenotypes that auto fluorescent lipopigments present in neurons and other cell types. Bi-allelic mutations of the gene TPP1 have been found to result in one of these disorders, called late-infantile neuronal ceroid lipofuscinosis, also known as CLN type 2 or Jansky–Bielschowsky disease. Mutations of gene is associated with the failure to degrade specific neuropeptides and a subunit of ATP synthase in the lysosome and accumulation of the fluorescent pigments. The disease causes childhood onset neurodegeneration resulting in epilepsy, movement disorders and progressive loss of motor and cognitive skills. Additionally, it causes retinal degeneration resulting in progressive loss of vision. Enzyme replacement therapy with cerliponase alfa can alter this course of disease, and is licensed for use in several countries.

References

  1. ^ GRCh38: Ensembl release 89: ENSG00000166340Ensembl, May 2017
  2. ^ GRCm38: Ensembl release 89: ENSMUSG00000030894Ensembl, May 2017
  3. "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. Liu CG, Sleat DE, Donnelly RJ, Lobel P (June 1998). "Structural organization and sequence of CLN2, the defective gene in classical late infantile neuronal ceroid lipofuscinosis". Genomics. 50 (2): 206–12. doi:10.1006/geno.1998.5328. PMID 9653647.
  6. ^ "Entrez Gene: TPP1 tripeptidyl peptidase I".
  7. "ACD ACD, shelterin complex subunit and telomerase recruitment factor [Homo sapiens (human)] - Gene - NCBI". www.ncbi.nlm.nih.gov. Retrieved 2017-02-03.
  8. Bukina AM, Tsvetkova IV, Semiachkina AN, Il'ina ES (Nov 2002). "". Voprosy Meditsinskoi Khimii. 48 (6): 594–8. PMID 12698559.
  9. "Uniprot: O14773 - TPP1_HUMAN".
  10. ^ Pal A, Kraetzner R, Gruene T, Grapp M, Schreiber K, Grønborg M, Urlaub H, Becker S, Asif AR, Gärtner J, Sheldrick GM, Steinfeld R (February 2009). "Structure of tripeptidyl-peptidase I provides insight into the molecular basis of late infantile neuronal ceroid lipofuscinosis". The Journal of Biological Chemistry. 284 (6): 3976–84. doi:10.1074/jbc.M806947200. hdl:11858/00-001M-0000-0012-D8E3-A. PMID 19038966.
  11. Williams, Ruth E.; Mole, Sara E. (2012-07-10). "New nomenclature and classification scheme for the neuronal ceroid lipofuscinoses". Neurology. 79 (2): 183–191. doi:10.1212/WNL.0b013e31825f0547. ISSN 0028-3878. PMID 22778232.
  12. Gardiner RM (2000). "The molecular genetic basis of the neuronal ceroid lipofuscinoses". Neurological Sciences. 21 (3 Suppl): S15–9. doi:10.1007/s100720070035. PMID 11073223. S2CID 9550598.
  13. Worgall, S.; Kekatpure, M. V.; Heier, L.; Ballon, D.; Dyke, J. P.; Shungu, D.; Mao, X.; Kosofsky, B.; Kaplitt, M. G.; Souweidane, M. M.; Sondhi, D.; Hackett, N. R.; Hollmann, C.; Crystal, R. G. (2007-08-07). "Neurological deterioration in late infantile neuronal ceroid lipofuscinosis". Neurology. 69 (6): 521–535. doi:10.1212/01.wnl.0000267885.47092.40. ISSN 0028-3878. PMID 17679671.
  14. Spaull, Robert; Soo, Audrey K.; Batzios, Spyros; Footitt, Emma; Whiteley, Rebecca; Mink, Jonathan W.; Carr, Lucinda; Gissen, Paul; Kurian, Manju A. (2024-08-13). "Evolution of Movement Disorders in Patients With CLN2-Batten Disease Treated With Enzyme Replacement Therapy". Neurology. 103 (3): e209615. doi:10.1212/WNL.0000000000209615. ISSN 0028-3878. PMC 11314953. PMID 38976822.
  15. Schulz, Angela; Ajayi, Temitayo; Specchio, Nicola; de Los Reyes, Emily; Gissen, Paul; Ballon, Douglas; Dyke, Jonathan P.; Cahan, Heather; Slasor, Peter; Jacoby, David; Kohlschütter, Alfried (2018-05-17). "Study of Intraventricular Cerliponase Alfa for CLN2 Disease". New England Journal of Medicine. 378 (20): 1898–1907. doi:10.1056/NEJMoa1712649. ISSN 0028-4793. PMID 29688815.

Further reading

External links

Metabolism, lipid metabolism, glycolipid enzymes
Sphingolipid
To glycosphingolipid
To ceramide
From ganglioside
Beta-galactosidase
Hexosaminidase A
Neuraminidase
Glucocerebrosidase
From globoside
Hexosaminidase B
Alpha-galactosidase
Beta-galactosidase
Glucocerebrosidase
From sphingomyelin
Sphingomyelin phosphodiesterase
Sphingomyelin phosphodiesterase 1
From sulfatide
Arylsulfatase A
Galactosylceramidase
To sphingosine
Other
NCL
Ceramide synthesis
Hydrolase: proteases (EC 3.4)
3.4.11-19: Exopeptidase
3.4.11
3.4.13
3.4.14
3.4.15
3.4.16
3.4.17
Metalloexopeptidases
Carboxypeptidase
A
A2
B
C
E
Glutamate II
Other/ungrouped
3.4.21-25: Endopeptidase
3.4.99: Unknown
Enzymes
Activity
Regulation
Classification
Kinetics
Types
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