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Transcription factor II D

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General transcription factors

Transcription factor II D (TFIID) is one of several general transcription factors that make up the RNA polymerase II preinitiation complex. RNA polymerase II holoenzyme is a form of eukaryotic RNA polymerase II that is recruited to the promoters of protein-coding genes in living cells. It consists of RNA polymerase II, a subset of general transcription factors, and regulatory proteins known as SRB proteins. Before the start of transcription, the transcription Factor II D (TFIID) complex binds to the core promoter DNA of the gene through specific recognition of promoter sequence motifs, including the TATA box, Initiator, Downstream Promoter, Motif Ten, or Downstream Regulatory elements.

Functions

  • Coordinates the activities of more than 70 polypeptides required for initiation of transcription by RNA polymerase II
  • Binds to the core promoter to position the polymerase properly
  • Serves as the scaffold for assembly of the remainder of the transcription complex
  • Acts as a channel for regulatory signals

Structure

TFIID is itself composed of TBP and several subunits called TATA-binding protein Associated Factors (TBP-associated factors, or TAFs). In a test tube, only TBP is necessary for transcription at promoters that contain a TATA box. TAFs, however, add promoter selectivity, especially if there is no TATA box sequence for TBP to bind to. TAFs are included in two distinct complexes, TFIID and B-TFIID. The TFIID complex is composed of TBP and more than eight TAFs. But, the majority of TBP is present in the B-TFIID complex, which is composed of TBP and TAFII170 (BTAF1) in a 1:1 ratio. TFIID and B-TFIID are not equivalent, since transcription reactions utilizing TFIID are responsive to gene specific transcription factors such as SP1, while reactions reconstituted with B-TFIID are not.

Subunits in the TFIID complex include:

See also

References

  1. ^ Louder, RK; He, Y; López-Blanco, JR; Fang, J; Chacón, P; Nogales, E (2016). "Structure of promoter-bound TFIID and model of human pre-initiation complex assembly". Nature. 531 (7596): 604–609. Bibcode:2016Natur.531..604L. doi:10.1038/nature17394. PMC 4856295. PMID 27007846.
  2. ^ Lee, Tong Ihn; Young, Richard A. (2000). "Transcription of eukaryotic protein-coding genes". Annu. Rev. Genet. 34: 77–137. doi:10.1146/annurev.genet.34.1.77. PMID 11092823.
  3. Dynlacht, Brian David; Hoey, Timothy; Tjian, Robert (Aug 1991). "Isolation of co-activators associated with the TATA-binding protein that mediate transcriptional activation". Cell. 66 (3): 563–576. doi:10.1016/0092-8674(81)90019-2. PMID 1907890. S2CID 5000858.
  4. "NCBI Entrez GeneID: 9044 BTAF1 BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170 kDa (Mot1 homolog, S. cerevisiae)".
  5. ^ Timmers, H.; Meyers, RE; Sharp, PA (Sep 1992). "Composition of transcription factor B-TFIID". Proc Natl Acad Sci USA. 89 (17): 8140–4. Bibcode:1992PNAS...89.8140T. doi:10.1073/pnas.89.17.8140. PMC 49872. PMID 1387711.
  6. Duttke, SH (March 2015). "Evolution and diversification of the basal transcription machinery". Trends in Biochemical Sciences. 40 (3): 127–9. doi:10.1016/j.tibs.2015.01.005. PMC 4410091. PMID 25661246.

External links

Cell signaling / Signal transduction
Signaling pathways
Agents
Receptor ligands
Receptors
Second messenger
Assistants:
Transcription factors
By distance
Other concepts
Transcription factors and intracellular receptors
(1) Basic domains
(1.1) Basic leucine zipper (bZIP)
(1.2) Basic helix-loop-helix (bHLH)
Group A
Group B
Group C
bHLH-PAS
Group D
Group E
Group F
bHLH-COE
(1.3) bHLH-ZIP
(1.4) NF-1
(1.5) RF-X
(1.6) Basic helix-span-helix (bHSH)
(2) Zinc finger DNA-binding domains
(2.1) Nuclear receptor (Cys4)
subfamily 1
subfamily 2
subfamily 3
subfamily 4
subfamily 5
subfamily 6
subfamily 0
(2.2) Other Cys4
(2.3) Cys2His2
(2.4) Cys6
(2.5) Alternating composition
(2.6) WRKY
(3) Helix-turn-helix domains
(3.1) Homeodomain
Antennapedia
ANTP class
protoHOX
Hox-like
metaHOX
NK-like
other
(3.2) Paired box
(3.3) Fork head / winged helix
(3.4) Heat shock factors
(3.5) Tryptophan clusters
(3.6) TEA domain
  • transcriptional enhancer factor
(4) β-Scaffold factors with minor groove contacts
(4.1) Rel homology region
(4.2) STAT
(4.3) p53-like
(4.4) MADS box
(4.6) TATA-binding proteins
(4.7) High-mobility group
(4.9) Grainyhead
(4.10) Cold-shock domain
(4.11) Runt
(0) Other transcription factors
(0.2) HMGI(Y)
(0.3) Pocket domain
(0.5) AP-2/EREBP-related factors
(0.6) Miscellaneous
see also transcription factor/coregulator deficiencies


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